Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015725: Mycoplasma bovis Hubei-1 chromosome, complete genome

NCBI: NC_015725

Host Lineage: Mycoplasma bovis; Mycoplasma; Mycoplasmataceae; Mycoplasmatales; Tenericutes; Bacteria

General Information: This bacterium causes a contagious disease of cattle causing respiratory disease, mastitis, and arthritis. It is found worldwide and is inherently resistant to certain groups of antibiotics because it does not possess a cell wall. More recently, this species has become resistant to tetracycline, tilmicosin and spectinomycin which have been traditionally used in its control.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
130742*5396523224Island text1.7589415.349920.2937Neighbours21BLASTN+30742.gbk
243050045237921880Island text2.1470912.916520.1243Neighbours21BLASTNIslandViewer 430500.gbk
357071658935418639Island text1.9994612.235519.9537Neighbours21BLASTNIslandViewer 570716.gbk
4670719*69912728409Island text3.4132317.762124.9033Neighbours21BLASTN+670719.gbk
5743567*76609922533Island text1.3938116.226923.1514Neighbours21BLASTN+743567.gbk
6926824*94899922176Island text1.5668112.642917.9437Neighbours21BLASTN+IslandViewer 926824.gbk