Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015723: Cupriavidus necator N-1 chromosome 2, complete sequence

NCBI: NC_015723

Host Lineage: Cupriavidus necator; Cupriavidus; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Cupriavidus necator also known as Ralstonia eutropha is a soil bacterium with diverse metabolic abilities. Strains of this organism are resistant to high levels of copper or are able to degrade chloroaromatic compounds such as halobenzoates and nitrophenols making them useful for bioremediation. Other strains have been studied for their ability to produce polyhydroxybutyrates which have industrial application. Another strain is able to attack other bacteria and fungi when nutrients in the soil are low.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
128036830928528918Island text3.5792227.854233.6123Neighbours11BLASTN+IslandViewer 280368.gbk
238400041247028471Island text2.0702223.109623.2075Neighbours11BLASTN+IslandViewer 384000.gbk
343016546626936105Island text1.6130717.63715.5349Neighbours11BLASTN+IslandViewer 430165.gbk
458972761261222886Island text1.8863219.647917.6119Neighbours11BLASTNIslandViewer 589727.gbk
596190998409922191Island text1.5317918.7515.2272Neighbours11BLASTN+961909.gbk
61047418106671419297Island text2.9342624.219837.0741Neighbours11BLASTN+IslandViewer 1047418.gbk
71347946137631028365Island text1.4336819.455313.2294Neighbours11BLASTN+IslandViewer 1347946.gbk
81448000147576527766Island text1.5239921.242716.0708Neighbours11BLASTN+IslandViewer 1448000.gbk
91486000153727051271Island text2.2413823.426419.7239Neighbours11BLASTNIslandViewer 1486000.gbk
101998363*201638918027Island text1.8516922.626515.3964Neighbours11BLASTN+IslandViewer 1998363.gbk
112116090*213706220973Island text2.2337123.093419.9186Neighbours11BLASTN+IslandViewer 2116090.gbk
122550000*257224222243Island text1.5030518.300120.5506Neighbours11BLASTN+IslandViewer 2550000.gbk