Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015722: Candidatus Midichloria mitochondrii IricVA chromosome, complete

NCBI: NC_015722

Host Lineage: Midichloria mitochondrii; Midichloria; Candidatus Midichloriaceae; Rickettsiales; Proteobacteria; Bacteria

General Information: Candidatus Midichloria mitochondrii is a symbiont of the tick Ixodes ricinus. The importance of this organism is two-fold. this symbiont is the only bacterium described that is able of invading the mitochondria of animals. The host Ixodes ricinus is a vector of a number of human diseases.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
14539*3359929061Island text1.7332920.460438.0611Neighbours21BLASTN+4539.gbk
2209722*23234422623Island text1.4921120.075432.0746Neighbours21BLASTN+209722.gbk
3462450*48909926650Island text1.7797220.880739.1563Neighbours21BLASTN+462450.gbk
4775611*79361718007Island text1.4257418.658827.1288Neighbours21BLASTN+775611.gbk
5852000*87422622227Island text1.704516.305933.7495NeighboursBLASTN+IslandViewer 852000.gbk
61050023*107209922077Island text1.877119.713636.3409Neighbours21BLASTN1050023.gbk