Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015717: Hyphomicrobium sp. MC1, complete genome

NCBI: NC_015717

Host Lineage: Hyphomicrobium; Hyphomicrobium; Hyphomicrobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Nitrogen fixation. Hyphomicrobium sp. (strain MC1) is a chloromethane-degrading Gram-negative bacterium isolated from industrial sewage sludge and from enrichment cultures originating from leaves of A.thaliana grown with chloromethane as the sole carbon source.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11723047175571232666Island text1.6382731.686323.2954Neighbours11BLASTNIslandViewer 1723047.gbk
22479394250178522392Island text1.7506729.457226.5189Neighbours11BLASTN+IslandViewer 2479394.gbk
34736500*475899922500Island text1.5928932.982746.847Neighbours11BLASTN4736500.gbk