Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015714: Treponema paraluiscuniculi Cuniculi A chromosome, complete genome

NCBI: NC_015714

Host Lineage: Treponema paraluiscuniculi; Treponema; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: Treponema paraluiscuniculi was isolated from a case of syphilis in a rabbit. This organism does not infect humans.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*1836418364Island text1.6228132.225849.732Neighbours10BLASTN1.gbk
2238891*25832919439Island text1.6580533.22952.9845Neighbours10BLASTN238891.gbk
354267957234629668Island text1.809742.522224.2508Neighbours10BLASTN+542679.gbk
4741044*76557024527Island text1.7426936.739443.8536Neighbours10BLASTN+741044.gbk
5768500*79153823039Island text1.7902435.48344.5565Neighbours10BLASTN+768500.gbk
6943178*96120118024Island text1.6616534.292930.631Neighbours10BLASTN+943178.gbk