Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_015713: Simkania negevensis Z chromosome gsn.131, complete genome

NCBI: NC_015713

Host Lineage: Simkania negevensis; Simkania; Simkaniaceae; Chlamydiales; Chlamydiae; Bacteria

General Information: This bacterium is named after Simona Kahane who discovered the organism as a contaminant in cell cultures at Ber Sheva, in the Negev Desert, Israel, in 1993. Simkania negevensis is a member of the order Chlamydiales and can reside intracellularly and has a slow prolonged developmental cycle. It has a wide geographical and environmental distribution and is associated with pneumonia, bronchiolitis and chronic obstructive pulmonary disease, furthermore, it is completely resistant to penicillin and to bacitracin. The natural hosts of Simkania negevensis bacteria might be amoebae.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11594114*161815624043Island text1.5520824.325143.2148Neighbours21BLASTN+1594114.gbk
21927297195508727791Island text1.6748526.00649.6372Neighbours314+1927297.gbk
32037179206159924421Island text1.5904824.174131.2Neighbours21BLASTN2037179.gbk
42193610*221614522536Island text1.5856822.300635.723Neighbours21BLASTN2193610.gbk
52453409*249799944591Island text1.7374925.321347.6114Neighbours21BLASTN2453409.gbk