Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015711: Myxococcus fulvus HW-1 chromosome, complete genome

NCBI: NC_015711

Host Lineage: Myxococcus fulvus; Myxococcus; Myxococcaceae; Myxococcales; Proteobacteria; Bacteria

General Information: This organism, like other myxobacteria, undergoes a complex development and differentiation pathway. When cell density increases, the organism switches to "social motility" where aggregates of cells can gather together into masses termed fruiting bodies that may consist of up to 100 000 cells. The motility system is not dependent on flagella like most bacteria, but instead relies on twitching pili: short extracellular appendages that may function analogously to oars in a rowboat. The myxobacteria have proved to be a rich source of novel natural products. Myxococcus fulvus produces a number of antibacterial, antifungal and cytotoxic substances which are being studies for therapeutic applications.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
123752626475927234Island text1.8264716.330320.8612Neighbours11BLASTN+237526.gbk
234643636528518850Island text1.7055614.579310.4824Neighbours11BLASTN+346436.gbk
357091059864327734Island text3.2408826.450828.5277Neighbours11BLASTN+IslandViewer 570910.gbk
460630663207725772Island text2.4867718.668929.8788Neighbours11BLASTN+IslandViewer 606306.gbk
51086000110879322794Island text1.6567914.567113.1563Neighbours11BLASTN1086000.gbk
61914162193395819797Island text1.5543714.141520.0024Neighbours11BLASTN1914162.gbk
72008578203297624399Island text1.9376918.747520.8303Neighbours11BLASTN+2008578.gbk
82050360207498124622Island text1.5867814.858916.6951Neighbours11BLASTN+2050360.gbk
92201225222038119157Island text1.7064515.815513.1959Neighbours11BLASTN2201225.gbk
102542051256326221212Island text1.5459814.810311.4915Neighbours11BLASTN2542051.gbk
113085038*311227427237Island text1.6642615.989818.6564Neighbours11BLASTN+IslandViewer 3085038.gbk
123122000314984427845Island text2.1777517.876625.1336Neighbours11BLASTN+IslandViewer 3122000.gbk
133193774322059926826Island text1.7227917.12823.1289Neighbours11BLASTN3193774.gbk
143313036334038527350Island text2.3366221.276839.4429Neighbours11BLASTN+3313036.gbk
153546500*357174025241Island text2.4244819.466713.5741Neighbours11BLASTN+IslandViewer 3546500.gbk
163697808372209924292Island text1.9260216.403726.8652Neighbours11BLASTN3697808.gbk
174033975405609922125Island text1.5389717.333433.1465Neighbours11BLASTN+4033975.gbk
184067905*410659938695Island text2.617818.301626.6691Neighbours11BLASTN+4067905.gbk
194319648434209922452Island text1.568814.749519.3446Neighbours11BLASTN+4319648.gbk
204811349483521923871Island text1.4624715.916816.3601Neighbours11BLASTN4811349.gbk
214957053*498749830446Island text3.1117825.119126.0202Neighbours11BLASTN4957053.gbk
225163000*518149018491Island text1.5005615.971511.7493Neighbours11BLASTN+IslandViewer 5163000.gbk
235250163527687226710Island text3.261321.047420.1654Neighbours11BLASTN+IslandViewer 5250163.gbk
245479879*550459924721Island text1.6081117.606123.9339Neighbours11BLASTN5479879.gbk
255761030*577913818109Island text1.5045722.227630.6676Neighbours11BLASTN5761030.gbk
265969061599337224312Island text2.4764415.7829.4267Neighbours11BLASTN+5969061.gbk
276149615618026530651Island text1.623418.628413.8309Neighbours11BLASTN+IslandViewer 6149615.gbk
286266432*630778741356Island text1.5660920.574633.442Neighbours11BLASTN6266432.gbk
296327792634701319222Island text1.5378915.983720.8064Neighbours11BLASTN6327792.gbk
306522808*656473541928Island text2.7678317.951721.4754Neighbours11BLASTN6522808.gbk
316707878*672709919222Island text1.9575714.961122.7616Neighbours11BLASTN+6707878.gbk
326796082*684217246091Island text1.8180517.008317.2741Neighbours11BLASTN6796082.gbk
337191968721357621609Island text1.4919415.606820.3192Neighbours11BLASTN+7191968.gbk
347265439729106325625Island text1.7948915.457821.9881Neighbours11BLASTN7265439.gbk
357471500749740725908Island text3.1208120.754425.4075Neighbours11BLASTN+7471500.gbk
367601733*762447622744Island text1.4397715.132520.6298Neighbours11BLASTN+7601733.gbk
377905360793972834369Island text1.6058314.425712.8335Neighbours11BLASTN+IslandViewer 7905360.gbk
388169752821033740586Island text2.092914.975916.6856Neighbours11BLASTN+IslandViewer 8169752.gbk
398424144844359919456Island text2.1940614.694613.3562Neighbours11BLASTN+IslandViewer 8424144.gbk
408852850*887609923250Island text2.0027218.767113.4913Neighbours11BLASTN8852850.gbk
418909256892967320418Island text1.4865219.224227.1349Neighbours11BLASTN+8909256.gbk
428964410900799943590Island text1.5353413.939217.3607Neighbours11BLASTN+IslandViewer 8964410.gbk