Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_015707: Thermotoga thermarum DSM 5069 chromosome, complete genome

NCBI: NC_015707

Host Lineage: Thermotoga thermarum; Thermotoga; Thermotogaceae; Thermotogales; Thermotogae; Bacteria

General Information: Country: Djibouti; Isolation: Continental solfataric spring; Africa; Temp: Hyperthermophile; Temp: 80C. This organism, a member of the Thermotogales, has the characteristic morphology of one or more cells contained in a sheath-like envelope which extends beyond the cell wall. Preliminary sequencing of Thermotogales genomes has identified extensive horizontal gene transfer between these organisms and the Archaea. Thermotoga thermarum does not grow at high salt concentrations (>0.6% NaCL). This organism also produces heat stable enzymes such as endoxylanase, beta xylosidase and alpha arabinofuranosidase which may have commercial uses.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1705628*72868223055Island text1.5792220.897833.7252Neighbours21BLASTN705628.gbk
2826649*84822321575Island text1.536919.708634.6388Neighbours21BLASTN826649.gbk
31394227141954625320Island text1.7373526.799638.7989Neighbours21BLASTN+IslandViewer 1394227.gbk
41614598163899124394Island text1.7389222.310323.448Neighbours21BLASTN1614598.gbk
51911431*193927027840Island text2.5148639.849241.1154Neighbours32BLASTN+1911431.gbk