Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015702: Parachlamydia acanthamoebae UV7, complete genome

NCBI: NC_015702

Host Lineage: Parachlamydia acanthamoebae; Parachlamydia; Parachlamydiaceae; Chlamydiales; Chlamydiae; Bacteria

General Information: This organism grows within Acanthamoeba spp., and uses these widespread ameobae as a replicative niche. They are the causal agents of severe upper respiratory infections in humans and animals. They are resistant to quinolones, antibiotics used to treat atypical pneuomonia.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
12505633*252875923127Island text1.4902622.361431.7274Neighbours21BLASTN2505633.gbk
22902934292332320390Island text1.5673521.055235.8164Neighbours21BLASTN2902934.gbk