Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015697: Lactobacillus reuteri SD2112 chromosome, complete genome

NCBI: NC_015697

Host Lineage: Lactobacillus reuteri; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Lactobacillus reuteri is a member of the normal microbial community of the gut in humans and animals. This organism produces antibiotic compounds, such as reutericin and reuterin, which have inhibitory effects on pathogenic microorganisms. In addition, Lactobacillus reuteri is commonly used as a probiotic to maintain the balance of the gut microbial flora and stimulate the intestinal immune system.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
133665*5730923645Island text2.8001433.957648.1922Neighbours21BLASTN+33665.gbk
2116000*13814922150Island text1.722322.79327.9328Neighbours21BLASTN+116000.gbk
3256000*27836622367Island text1.3985123.261235.9544Neighbours21BLASTN+256000.gbk
4321311*34415922849Island text2.8220631.991745.3414Neighbours21BLASTN+321311.gbk
546823449009821865Island text1.5382630.398833.1539Neighbours21BLASTN+IslandViewer 468234.gbk
650649453425327760Island text1.5770929.764336.9937Neighbours21BLASTN+IslandViewer 506494.gbk
7742500*76857626077Island text1.5526831.085333.646Neighbours21BLASTN+IslandViewer 742500.gbk
81295412*131859923188Island text2.3191629.059642.3594Neighbours21BLASTN1295412.gbk
91480552*150233121780Island text2.77230.86748.5772Neighbours21BLASTN+1480552.gbk
101814128*185559941472Island text2.8688232.107548.7103Neighbours21BLASTN+1814128.gbk