Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015696: Francisella sp. TX077308 chromosome, complete genome

NCBI: NC_015696

Host Lineage: Francisella; Francisella; Francisellaceae; Thiotrichales; Proteobacteria; Bacteria

General Information: The genus Francisella is composed of non-motile, aerobic rod-shaped Gram-negative bacteria, many of which are animal pathogens.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
147484*6907921596Island text1.5176216.680929.7945Neighbours21BLASTN47484.gbk
2105748*12926823521Island text1.5368716.038424.9239Neighbours21BLASTN105748.gbk
3220798*25652935732Island text1.7691521.440641.0181Neighbours21BLASTN220798.gbk
428545633044644991Island text1.5554317.577433.144Neighbours21BLASTN+IslandViewer 285456.gbk
548625050481218563Island text1.6309716.485329.3885Neighbours21BLASTN+486250.gbk
6517941*57358855648Island text1.8729917.453834.3949Neighbours21BLASTN517941.gbk
7610000*65257442575Island text1.5606516.953235.0243Neighbours21BLASTN610000.gbk
875815377757819426Island text1.4702315.892529.0474Neighbours21BLASTN+758153.gbk
979800082319525196Island text1.7104918.246834.327Neighbours21BLASTN798000.gbk
101749863*176952119659Island text1.8611915.591632.2451Neighbours21BLASTN+1749863.gbk
111853979187727023292Island text1.4820317.558416.7986Neighbours21BLASTN1853979.gbk