Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015687: Clostridium acetobutylicum DSM 1731 chromosome, complete genome

NCBI: NC_015687

Host Lineage: Clostridium acetobutylicum; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This organism is a benign saccharolytic and proteolytic soil bacterium capable of producing a number of organic solvents (solventogenic bacterium) through fermentation of various organic compounds. The first strains of C. acetobutyricum were isolated by Chaim Weizman during the World War I and used to develop industrial starch-based acetone, butanol and ethanol fermentation processes.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*1859918599Island text5.4294424.780143.836Neighbours21BLASTN1.gbk
295918*11738721470Island text2.574420.269637.2541Neighbours21BLASTN+95918.gbk
3155554*17321417661Island text5.2224725.477346.2313Neighbours344BLASTN155554.gbk
4250768*27192421157Island text4.9760324.155946.5038Neighbours21BLASTN+250768.gbk
527964130219622556Island text3.17519.932541.1378Neighbours21BLASTN+279641.gbk
6303810*36254358734Island text5.9152425.416648.4773Neighbours21BLASTN+303810.gbk
738950040746317964Island text2.7359919.783638.6832Neighbours21BLASTN389500.gbk
81037706*106791230207Island text1.7107823.159632.3476Neighbours21BLASTN1037706.gbk
91097447*112292725481Island text4.3476722.57643.3474Neighbours21BLASTN+1097447.gbk
101230948125559924652Island text2.2551920.057134.386Neighbours21BLASTN1230948.gbk
111377367140027722911Island text1.8174620.318633.981Neighbours21BLASTN1377367.gbk
121478668150267124004Island text1.8444918.227129.5712Neighbours21BLASTN1478668.gbk
131508664153215523492Island text2.5060218.90235.5646Neighbours21BLASTN+1508664.gbk
141811573*183463823066Island text2.0332719.886935.9179Neighbours21BLASTN1811573.gbk
152025345204784222498Island text2.7963221.635139.7168Neighbours21BLASTN+2025345.gbk
162145452*216815522704Island text1.8525318.777436.1433Neighbours21+2145452.gbk
172632557*266659934043Island text2.5965920.825635.7151Neighbours21BLASTN2632557.gbk
183252233*329176539533Island text2.9239221.172637.8272Neighbours21BLASTN+3252233.gbk
193302372*332181219441Island text2.6157120.228637.2564Neighbours21BLASTN+3302372.gbk
203326461*335126824808Island text4.7131922.987644.3411Neighbours21BLASTN+3326461.gbk
213470829*349051819690Island text1.8137120.34936.798Neighbours21BLASTN3470829.gbk
223766000*379114625147Island text3.2276222.821740.432Neighbours21BLASTN+3766000.gbk
233907000*392836521366Island text2.4561220.23531.2929Neighbours21BLASTN3907000.gbk