Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015684: Oligotropha carboxidovorans OM5 chromosome, complete genome

NCBI: NC_015684

Host Lineage: Oligotropha carboxidovorans; Oligotropha; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Oligotropha carboxidovorans is able to use carbon monoxide as an energy source. Isolated in 1978 from wastewater in Göttingen, Germany. Chemolithoautotrophic.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1362236*40024938014Island text2.5473431.949924.0456Neighbours11BLASTNIslandViewer 362236.gbk
21343251136676923519Island text1.739427.734732.1531Neighbours11BLASTN+IslandViewer 1343251.gbk
32000771202392823158Island text1.4847326.610221.0647Neighbours11BLASTN+IslandViewer 2000771.gbk
42033985*205409920115Island text1.5849228.262823.1951Neighbours11BLASTN+IslandViewer 2033985.gbk
52369651239009920449Island text1.4650421.472521.9325Neighbours11BLASTN+IslandViewer 2369651.gbk
63157941318409926159Island text1.5023722.926831.3436Neighbours11BLASTN+IslandViewer 3157941.gbk
73340519*336660926091Island text2.2324726.56932.157Neighbours11BLASTN3340519.gbk