Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015683: Corynebacterium ulcerans BR-AD22 chromosome, complete genome

NCBI: NC_015683

Host Lineage: Corynebacterium ulcerans; Corynebacterium; Corynebacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: They may be found as members of the normal microflora of humans, where these bacteria find a suitable niche in virtually every anatomic site. Corynebacterium ulcerans is commonly associated with dairy animals and unpasturized dairy products. This organism has been implicated in bovine mastitis and can cause skin infections and a diptheria-like disease in humans.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
124137726784326467Island text1.7155844.334338.6425BLASTN+IslandViewer 241377.gbk
2732668*75500922342Island text1.6422237.128141.5438Neighbours17BLASTN+732668.gbk
3947048*96846321416Island text1.5822835.207949.8518Neighbours17BLASTN947048.gbk
41146913116587518963Island text1.6744732.730449.6528Neighbours17BLASTN+1146913.gbk
51176449*119591519467Island text1.5729733.309539.1745Neighbours17BLASTN1176449.gbk
61270782129415323372Island text1.5975834.176738.178Neighbours17BLASTN+IslandViewer 1270782.gbk
71296000131809922100Island text2.1494733.900859.6144BLASTN+IslandViewer 1296000.gbk
81432995*145632723333Island text1.4495932.745652.0831Neighbours17BLASTN1432995.gbk
91467000148686319864Island text1.5903333.169739.5318Neighbours17BLASTN1467000.gbk
102176156*219839422239Island text1.6350935.055953.4759Neighbours11BLASTN+2176156.gbk
112249949227359823650Island text1.5546337.597344.7497Neighbours17BLASTN2249949.gbk
122279904231865238749Island text1.6921439.025947.6923Neighbours17BLASTN2279904.gbk
132469481249209922619Island text1.9739338.223554.5194Neighbours17BLASTN2469481.gbk