Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015682: Thermodesulfobacterium sp. OPB45 chromosome, complete genome

NCBI: NC_015682

Host Lineage: Thermodesulfobacterium geofontis; Thermodesulfobacterium; Thermodesulfobacteriaceae; Thermodesulfobacteriales; Thermodesulfobacteria; Bacteria

General Information: Country: USA; Environment: Fresh water; Temp: Thermophile; Temp: 70C; Isolation: hot spring from Yellowstone National Park.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1150808*17730826501Island text1.8417719.947336.5867Neighbours21BLASTN150808.gbk
2205900*25109945200Island text2.6637132.867323.9136Neighbours21BLASTN+IslandViewer 205900.gbk
3379373*40238523013Island text1.6225217.415529.8209Neighbours21BLASTN379373.gbk
4736746*76603529290Island text2.2907921.500338.6737Neighbours21BLASTN736746.gbk
51074263*109616721905Island text1.558722.037937.8695Neighbours21BLASTN+IslandViewer 1074263.gbk
61457004148205725054Island text1.4230817.132827.7622Neighbours21BLASTN+1457004.gbk