Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_015681: Thermodesulfatator indicus DSM 15286 chromosome, complete genome

NCBI: NC_015681

Host Lineage: Thermodesulfatator indicus; Thermodesulfatator; Thermodesulfobacteriaceae; Thermodesulfobacteriales; Thermodesulfobacteria; Bacteria

General Information: Country: Indian Ocean; Environment: Deep sea, Hydrothermal vent, Marine; Isolation: Deep-sea hydrothermal vent site; Temp: Thermophile; Temp: 70C. Thermodesulfatator indicus was first isolated from a deep sea hydrothermal vent. This organism is an anaerobic chemolithoautotroph which uses sulfate as an electron acceptor.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1102000*12480522806Island text1.5021230.496147.3627Neighbours30BLASTN+102000.gbk
240108442149620413Island text2.5648726.076117.7813Neighbours21BLASTN+401084.gbk
31201926122311721192Island text1.5224726.53217.1446NeighboursBLASTN+1201926.gbk
41558873157710318231Island text1.5178632.861119.2776BLASTN+IslandViewer 1558873.gbk
51685672*170722221551Island text1.6415229.293252.1945Neighbours30BLASTN1685672.gbk
61859674187899319320Island text2.6361825.294916.1225Neighbours21BLASTNIslandViewer 1859674.gbk