Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015680: Pyrococcus yayanosii CH1 chromosome, complete genome

NCBI: NC_015680

Host Lineage: Pyrococcus yayanosii; Pyrococcus; Thermococcaceae; Thermococcales; Euryarchaeota; Archaea

General Information: Pyrococcus yayanosii CH1 is the first obligate piezophilic hyperthermophilic archaeon isolated from the deep-sea hydrothermal site Ashadze on the mid-Atlantic ridge at a depth of 4,100 m. This organism grows within a temperature range of 80 to 108 degrees C and a hydrostatic pressure range of 20 to 120 MPa, with optima at 98 degrees C and 52 MPa, respectively.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1215005887337374Island text1.6617233.385537.744Neighbours313BLASTN+IslandViewer 21500.gbk
2369777*39355123775Island text1.3942733.292827.4333Neighbours313BLASTN+IslandViewer 369777.gbk
3465803*48504019238Island text1.461630.787926.0202Neighbours313BLASTN+465803.gbk
4663341*69144728107Island text2.2313238.575126.653Neighbours313BLASTNIslandViewer 663341.gbk
569145771033118875Island text1.5331735.688215.4221Neighbours36BLASTNIslandViewer 691457.gbk
6711753*73092719175Island text1.5015832.560219.841Neighbours313BLASTN+711753.gbk
775550077959424095Island text1.7606835.73329.1036Neighbours36BLASTN+IslandViewer 755500.gbk
8841783*86480223020Island text1.4532432.611929.5103Neighbours313BLASTN841783.gbk
993048395054220060Island text1.4997530.538748.5443Neighbours313BLASTN+930483.gbk
101108971112809919129Island text1.548832.680324.0453Neighbours36BLASTN+IslandViewer 1108971.gbk
111233824125420220379Island text1.5965941.620136.6021Neighbours36BLASTN+1233824.gbk
121275252*130099125740Island text1.6330.0638.3725Neighbours313BLASTN+1275252.gbk
131315040*135525840219Island text1.91338.178924.3645Neighbours36BLASTN+IslandViewer 1315040.gbk
141475917*149797622060Island text2.0539731.539226.9064Neighbours313BLASTN1475917.gbk
151562535161211749583Island text2.6679539.820721.3708Neighbours36BLASTNIslandViewer 1562535.gbk