Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015678: Streptococcus parasanguinis ATCC 15912 chromosome, complete genome

NCBI: NC_015678

Host Lineage: Streptococcus parasanguinis; Streptococcus; Streptococcaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Most streptococci are facultative anaerobes, and some are obligate anaerobes. Serologic grouping is based on antigenic differences in cell wall carbohydrates, in cell wall pili-associated protein, and in the polysaccharide capsule in group B streptococci. This is a species of Gram-positive, non-motile, non-spore-forming, cocci. It has been isolated from human throat, blood and urine and from ovine clinical samples. It can cause subclinical mastitis in sheep and is involved in dental plaque formation in humans



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1966000*98580519806Island text1.5265537.793449.9254Neighbours16BLASTN+966000.gbk
21443178*146976126584Island text1.597232.770444.1815Neighbours16BLASTN1443178.gbk