Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015677: Ramlibacter tataouinensis TTB310 chromosome, complete genome

NCBI: NC_015677

Host Lineage: Ramlibacter tataouinensis; Ramlibacter; Comamonadaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This species is an aerobic, chemo-organotrophic, cyst-producing soil bacterium. This type strain was originally isolated from subsurface desert soil from Tunisia.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112102721027Island text3.2354923.157823.8112Neighbours11BLASTNIslandViewer 1.gbk
2285896*30970623811Island text2.703420.068815.0184Neighbours11BLASTNIslandViewer 285896.gbk
389667391821221540Island text1.67316.331821.1475Neighbours11BLASTN+IslandViewer 896673.gbk
41282865131149128627Island text1.6133115.202527.683Neighbours11BLASTN1282865.gbk
51460000148235222353Island text1.764518.627216.4155Neighbours11BLASTN+IslandViewer 1460000.gbk
62715912274137925468Island text2.2120320.697614.8343Neighbours11BLASTN+IslandViewer 2715912.gbk
72939301296630027000Island text2.1677821.18932.5715Neighbours11BLASTN2939301.gbk
83179910321589035981Island text3.154922.244919.1756Neighbours11BLASTN+IslandViewer 3179910.gbk
93339181*336388124701Island text1.9039819.064815.5889Neighbours11BLASTN+IslandViewer 3339181.gbk
103520524*354474924226Island text2.2012219.114815.9736Neighbours11BLASTN3520524.gbk
113685452370903723586Island text1.7404216.117522.3901Neighbours11BLASTN+IslandViewer 3685452.gbk
123787419*381339525977Island text1.9331516.717512.9885Neighbours11BLASTN+IslandViewer 3787419.gbk
133965716398829822583Island text1.5447317.521916.287Neighbours11BLASTNIslandViewer 3965716.gbk