Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015676: Methanosalsum zhilinae DSM 4017 chromosome, complete genome

NCBI: NC_015676

Host Lineage: Methanosalsum zhilinae; Methanosalsum; Methanosarcinaceae; Methanosarcinales; Euryarchaeota; Archaea

General Information: Environment: Fresh water, Sediment; Isolation: Sediment of alkaline lake; Temp: Mesophile; Country: Egypt: Wadi el Natrun. Methanosalsum zhilinae was first isolated from an alkaline, saline lake sediment. This organism uses trimethylamine and methanol for growth and methanogenesis.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
110974314929839556Island text2.3018326.696310.9402Neighbours21BLASTN+IslandViewer 109743.gbk
220839323016021768Island text1.5995633.062441.4152Neighbours328BLASTN208393.gbk
3546895*56610719213Island text1.6025523.255138.5735Neighbours21BLASTN546895.gbk
479463981342918791Island text1.7535523.610819.7344NeighboursBLASTN+794639.gbk
51009298103176122464Island text1.4676824.252227.8273Neighbours21BLASTN1009298.gbk
61305972*132388817917Island text1.919323.47438.4882Neighbours21BLASTN1305972.gbk
71361468*139486333396Island text2.0161324.944911.0908Neighbours21BLASTN+1361468.gbk
81417456*143713819683Island text1.5339522.838614.6973Neighbours21BLASTN+IslandViewer 1417456.gbk
91530000*155914929150Island text1.8046923.359823.6659Neighbours21BLASTN+IslandViewer 1530000.gbk
101663700168654622847Island text1.3794326.787523.456Neighbours21BLASTN1663700.gbk
111736375*177700440630Island text1.917328.115922.3954Neighbours21BLASTN1736375.gbk
122099930*212182721898Island text1.5468326.963838.181Neighbours21BLASTN2099930.gbk