Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015675: Mesorhizobium opportunistum WSM2075 chromosome, complete genome

NCBI: NC_015675

Host Lineage: Mesorhizobium opportunistum; Mesorhizobium; Phyllobacteriaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Environment: Host, Rhizosphere, Root nodule; Temp: Mesophile; Isolation: Antonio's farm, Antonio Rd.; Country: Australia: Northam, Western Australia. Mesorhizobium opportunistum is able to nodulate the plant Biserrula pelecinus, but is ineffective at fixing nitrogen.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11721543*175553633994Island text2.5033728.796734.1389Neighbours11BLASTN+1721543.gbk
22247960*227609928140Island text2.0751128.874724.0947Neighbours11BLASTNIslandViewer 2247960.gbk
32567000*258988822889Island text1.7941627.626522.1204Neighbours11BLASTN+IslandViewer 2567000.gbk
42697131272137024240Island text1.6959825.885826.0348Neighbours11BLASTN+2697131.gbk
52839000285961920620Island text1.5317924.813623.9087Neighbours11BLASTN+IslandViewer 2839000.gbk
63046852307978032929Island text1.8583824.237527.6817Neighbours11BLASTNIslandViewer 3046852.gbk
74442000446409922100Island text1.4786524.908815.3003Neighbours11BLASTNIslandViewer 4442000.gbk
84493758451841624659Island text1.4602422.276320.7029Neighbours11BLASTNIslandViewer 4493758.gbk
94526500455384027341Island text1.6135222.640720.8501Neighbours11BLASTNIslandViewer 4526500.gbk
104565500458788322384Island text1.5669923.454421.136Neighbours11BLASTN+4565500.gbk
115607297563540128105Island text1.6899422.434925.0767Neighbours11BLASTN+IslandViewer 5607297.gbk
126228000625073922740Island text1.4930522.045226.6659Neighbours11BLASTNIslandViewer 6228000.gbk
136276357633952063164Island text1.6060624.676319.5373Neighbours11BLASTNIslandViewer 6276357.gbk
146342164638209939936Island text1.6961526.602820.7946Neighbours11BLASTN+IslandViewer 6342164.gbk
156423000644845225453Island text1.6796524.764923.3439Neighbours11BLASTN+IslandViewer 6423000.gbk
166464000648809924100Island text1.8246320.899222.8343Neighbours11BLASTN+IslandViewer 6464000.gbk
176493444653829644853Island text1.5410121.084121.4592Neighbours11BLASTN+IslandViewer 6493444.gbk
186538500655750519006Island text1.528623.139616.4515Neighbours11BLASTN+IslandViewer 6538500.gbk
196615245663775722513Island text1.5797720.972821.3229Neighbours11BLASTN+IslandViewer 6615245.gbk
206651899667736225464Island text1.4988525.717419.1314Neighbours11BLASTNIslandViewer 6651899.gbk