Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_015674: Helicobacter bizzozeronii CIII-1, complete genome

NCBI: NC_015674

Host Lineage: Helicobacter bizzozeronii; Helicobacter; Helicobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: The only nonpylori Helicobacter species isolated from human gastric biopsy tissue. Isolated in March 2008 from corpus biopsy tissue of a 45-year-old female patient with severe gastric symptoms.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1660008974223743Island text1.5101131.47523.5656Neighbours343BLASTN66000.gbk
21114915113822623312Island text1.4077830.307623.2915Neighbours343BLASTN1114915.gbk
31562968*158294119974Island text1.5141637.508513.1429Neighbours343BLASTNIslandViewer 1562968.gbk
41605923163637730455Island text1.7206631.676623.8209Neighbours343BLASTN+IslandViewer 1605923.gbk