Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015672: Flexistipes sinusarabici DSM 4947 chromosome, complete genome

NCBI: NC_015672

Host Lineage: Flexistipes sinusarabici; Flexistipes; Deferribacteraceae; Deferribacterales; Deferribacteres; Bacteria

General Information: Country: Red Sea; Environment: Marine; Isolation: Brine water; Atlantis II Deep, Red Sea; Temp: Thermophile; Temp: 45 - 50C. This is a gram-negative flexible bacterium isolated from brine water samples of the Atlantis II Deep of the Red Sea at a depth of 2000 m. Halophilic and moderately thermophilic.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1101878*12200920132Island text1.6604121.346137.5259Neighbours21BLASTN101878.gbk
2203139*22743824300Island text1.4431928.064246.315Neighbours21BLASTN+203139.gbk
3399522*41941219891Island text1.9809621.49233.5242Neighbours21BLASTN+399522.gbk
4470000*49397723978Island text1.8432224.35642.158Neighbours21BLASTN470000.gbk
569990472527225369Island text1.4097122.896439.7917Neighbours21BLASTN+699904.gbk
6788417*81672128305Island text1.9229332.944241.7475Neighbours21BLASTN+IslandViewer 788417.gbk
71566565*158606819504Island text1.5658822.249938.1106Neighbours21BLASTN1566565.gbk
81921023*196657045548Island text1.5272924.767744.8887Neighbours21BLASTN+1921023.gbk
92071141*209068919549Island text1.5198920.984338.8842Neighbours21BLASTN2071141.gbk
102102580*212059918020Island text1.5716621.762539.5602Neighbours21BLASTN+2102580.gbk
112236000*225785021851Island text2.4771536.061247.7944Neighbours21BLASTN+2236000.gbk