Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015671: Cellvibrio gilvus ATCC 13127 chromosome, complete genome

NCBI: NC_015671

Host Lineage: Cellvibrio gilvus; Cellvibrio; Cellulomonadaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Isolation: bovine feces; Temp: Mesophile; Temp: 37C. Cellvibrio gilvus was isolated from bovine feces. This organism is able to degrade cellulose.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
113989216047420583Island text1.5374410.79688.85091Neighbours11BLASTN+IslandViewer 139892.gbk
225580830092445117Island text1.7803513.371810.3168Neighbours11BLASTN+IslandViewer 255808.gbk
3557720*57761419895Island text1.7176711.855510.5453Neighbours11BLASTN+IslandViewer 557720.gbk
4874500*89942324924Island text1.4843815.156921.1841Neighbours11BLASTN+874500.gbk
51540860156478123922Island text1.4602212.59739.0145Neighbours8BLASTN1540860.gbk
61678088*170223524148Island text1.7727312.983110.3959Neighbours11BLASTN+IslandViewer 1678088.gbk
71865752*188581920068Island text1.8291412.403714.3562Neighbours11BLASTN+IslandViewer 1865752.gbk
81950081197227622196Island text1.5225312.603410.0646Neighbours11BLASTN1950081.gbk
92011462203421622755Island text1.6903911.26887.79632Neighbours11BLASTN+2011462.gbk
102371632*239461522984Island text1.499412.5797.43696Neighbours11BLASTN+IslandViewer 2371632.gbk
113093596311775724162Island text1.633512.62711.4434Neighbours11BLASTN+IslandViewer 3093596.gbk
123153325317759924275Island text2.0863616.48928.6038Neighbours11BLASTNIslandViewer 3153325.gbk
133211972325530043329Island text1.5523813.102910.2336Neighbours11BLASTN+IslandViewer 3211972.gbk
143470903*349501524113Island text1.7094412.486610.8156Neighbours11BLASTN+IslandViewer 3470903.gbk