Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015667: Halopiger xanaduensis SH-6 plasmid pHALXA02, complete sequence

NCBI: NC_015667

Host Lineage: Halopiger xanaduensis; Halopiger; Halobacteriaceae; Halobacteriales; Euryarchaeota; Archaea

General Information: Country: China; Environment: Soil, Salinewater; Isolation: Sediment of saline Lake Shangmatala in Inner Mongolia; Temp: Mesophile; Temp: 37C. Halopiger xanaduensis was first isolated from a saline lake in China. This organism requires a minimum of 15% NaCl for growth with optimum growth occurring at concentrations of 25%.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
116511*4259926089Island text1.5141633.025328.9682Neighbours12BLASTN16511.gbk