Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015666: Halopiger xanaduensis SH-6 chromosome, complete genome

NCBI: NC_015666

Host Lineage: Halopiger xanaduensis; Halopiger; Halobacteriaceae; Halobacteriales; Euryarchaeota; Archaea

General Information: Country: China; Environment: Soil, Salinewater; Isolation: Sediment of saline Lake Shangmatala in Inner Mongolia; Temp: Mesophile; Temp: 37C. Halopiger xanaduensis was first isolated from a saline lake in China. This organism requires a minimum of 15% NaCl for growth with optimum growth occurring at concentrations of 25%.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
125274032893576196Island text1.8441825.100124.4229Neighbours12BLASTN+IslandViewer 252740.gbk
2415007*43911924113Island text2.2812126.364925.2325Neighbours11BLASTN415007.gbk
3625755*65023524481Island text1.7203720.171823.0441Neighbours11BLASTN+625755.gbk
41293500*131744323944Island text2.1724925.969725.6111Neighbours11BLASTN1293500.gbk
51623790*166298439195Island text4.7605135.136429.1549Neighbours12BLASTNIslandViewer 1623790.gbk
61672740169769124952Island text1.818220.233912.6564Neighbours12BLASTN+1672740.gbk
71849618*187832428707Island text2.0162924.722219.9209Neighbours11BLASTNIslandViewer 1849618.gbk
82224717*225744832732Island text2.7374228.590126.2538Neighbours11BLASTN+IslandViewer 2224717.gbk
92721350*274409922750Island text2.1093826.322626.1188Neighbours11BLASTN2721350.gbk
103606053*364024534193Island text2.2990924.443224.0732Neighbours11BLASTN+IslandViewer 3606053.gbk