Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015663: Enterobacter aerogenes KCTC 2190 chromosome, complete genome

NCBI: NC_015663

Host Lineage: Enterobacter aerogenes; Enterobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism is part of the normal human gastrointestinal flora which is able to cause opportunistic infections such as bacteremia, endocarditis and infections of the urinary and lower respiratory tract.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
113797137971Island text4.2867346.717923.2202Neighbours41BLASTN+IslandViewer 1.gbk
254942558284933425Island text2.2969736.366125.5555Neighbours41BLASTN+IslandViewer 549425.gbk
3770485*79596825484Island text2.8069539.833229.4078Neighbours51BLASTN+IslandViewer 770485.gbk
41356982*138951032529Island text4.5154347.732522.2608Neighbours41BLASTN+IslandViewer 1356982.gbk
51869000191219543196Island text2.0324838.368323.6942Neighbours41BLASTN+IslandViewer 1869000.gbk
61902344*192926126918Island text1.7801431.128426.3187Neighbours51BLASTN+IslandViewer 1902344.gbk
71934863195458219720Island text1.6395930.693728.3713Neighbours51BLASTN+1934863.gbk
82090442*212127330832Island text1.7679634.952331.8154Neighbours41BLASTN+IslandViewer 2090442.gbk
92694373*273418439812Island text3.4897542.448628.174Neighbours41BLASTN+IslandViewer 2694373.gbk
102807574*283616128588Island text1.7962732.135432.763Neighbours41BLASTNIslandViewer 2807574.gbk
113466471*350514038670Island text4.0339846.058824.1349Neighbours41BLASTN+IslandViewer 3466471.gbk
123586836*361030823473Island text1.9221830.009732.2086Neighbours41BLASTN+3586836.gbk
133742738376655823821Island text2.0690235.434918.9594Neighbours41BLASTN+IslandViewer 3742738.gbk
144129685415207222388Island text1.8471432.505127.1673Neighbours41BLASTN4129685.gbk
154347187437073923553Island text1.4266531.316925.1127Neighbours41BLASTN+4347187.gbk
164447984447024622263Island text1.867531.644426.8851Neighbours51BLASTN+4447984.gbk
174488058451433926282Island text2.054437.076621.7909Neighbours41BLASTN+IslandViewer 4488058.gbk
184522109454904226934Island text1.856134.19633.5817Neighbours41BLASTN+IslandViewer 4522109.gbk
194735808475809922292Island text2.0716133.914524.6389Neighbours41BLASTNIslandViewer 4735808.gbk
204767443479659929157Island text1.8042137.245238.3438Neighbours41BLASTN+IslandViewer 4767443.gbk
214906652*493024623595Island text2.1699335.10222.5329Neighbours41BLASTN+IslandViewer 4906652.gbk
224950000501991769918Island text3.2188840.245226.5498Neighbours41BLASTNIslandViewer 4950000.gbk
235253242527565022409Island text1.7895530.459621.3302Neighbours41BLASTN+IslandViewer 5253242.gbk