Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015656: Frankia symbiont of Datisca glomerata chromosome, complete genome

NCBI: NC_015656

Host Lineage: Frankia symbiont of Datisca glomerata; Frankia; Frankiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Environment: Host, Plant symbiont, Soil; Isolation: Datisca glomerata; Temp: Mesophile. Frankia symbiont of Datisca glomerata. Frankia sp. strains form N2-fixing root nodules on woody trees and shrubs. This is a symbiont of the eudicot Datisca glomerata.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1105840*12383817999Island text1.5754612.050120.9526Neighbours11BLASTN+105840.gbk
2132633*16991437282Island text1.7089414.569921.2777Neighbours11BLASTN+132633.gbk
3381554*40733625783Island text1.9454415.96325.9406Neighbours11BLASTN+381554.gbk
4454500*48384529346Island text1.7252116.000911.426Neighbours11BLASTN454500.gbk
5632960*66311030151Island text1.8980417.795718.1386Neighbours11BLASTN+IslandViewer 632960.gbk
61469501148804818548Island text1.608412.700614.8496Neighbours11BLASTN+1469501.gbk
71592021*161171419694Island text2.0545412.560810.0743Neighbours11BLASTN+IslandViewer 1592021.gbk
81618329163809919771Island text2.059913.615616.9777Neighbours11BLASTN+1618329.gbk
91653450168062227173Island text1.7670414.8121.9662Neighbours11BLASTN+1653450.gbk
101830220*184914718928Island text1.5610913.10814.3136Neighbours11BLASTN1830220.gbk
111876627*189859921973Island text1.7955414.131818.7768Neighbours11BLASTN+1876627.gbk
121947810*196775019941Island text1.7740512.790614.4171Neighbours11BLASTN+IslandViewer 1947810.gbk
132433370245609922730Island text1.6962914.602518.7101Neighbours11BLASTN2433370.gbk
142484749*251548430736Island text2.4217917.185716.9643Neighbours11BLASTN+2484749.gbk
152565417258963424218Island text1.6493913.92212.4152Neighbours11BLASTN2565417.gbk
162795784281882923046Island text1.7004712.97737.16896Neighbours11BLASTN+2795784.gbk
172900730*292259921870Island text2.0617414.265811.7402NeighboursBLASTN+2900730.gbk
183200500322633325834Island text1.6873615.413919.3353Neighbours11BLASTN3200500.gbk
193232809*325197319165Island text1.8299713.585221.9028Neighbours11BLASTN+3232809.gbk
203300747332502424278Island text1.7568212.767515.7114Neighbours11BLASTN+3300747.gbk
213653440367842924990Island text1.4704814.056417.4382Neighbours11BLASTN+3653440.gbk
224367764439222424461Island text1.482814.901523.9311Neighbours11BLASTN+4367764.gbk
234850833487124120409Island text1.6611214.688715.2587NeighboursBLASTN+4850833.gbk
244879904490330023397Island text1.5122813.661220.6785Neighbours11BLASTN4879904.gbk
255084767510643621670Island text1.5606114.548924.9945Neighbours11BLASTN+5084767.gbk