Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015638: Lacinutrix sp. 5H-3-7-4 chromosome, complete genome

NCBI: NC_015638

Host Lineage: Lacinutrix; Lacinutrix; Flavobacteriaceae; Flavobacteriales; Bacteroidetes; Bacteria

General Information: Environment: Sea water; Isolation: deep sea; Temp: Psychrophile; Temp: 17.5C.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
123654*4797824325Island text2.5369420.686732.3392Neighbours21BLASTN23654.gbk
2624548122418771Island text1.6416817.169331.7335Neighbours21BLASTN62454.gbk
3328601*34893320333Island text1.7526717.097830.5827Neighbours21BLASTN+328601.gbk
4429913*45655126639Island text2.3363918.378131.9029Neighbours21BLASTN429913.gbk
5591964*61155819595Island text2.010216.667732.9334Neighbours21BLASTN591964.gbk
6877233*89816120929Island text1.757317.097332.1854Neighbours21BLASTN+877233.gbk
792366094257318914Island text1.7861716.777134.5535Neighbours21BLASTN923660.gbk
81029721106817938459Island text1.5380916.863329.8123Neighbours21BLASTN+1029721.gbk
91541346*155913617791Island text1.7898616.907831.703Neighbours21BLASTN1541346.gbk
101824794*186059335800Island text1.8315216.672732.1571Neighbours21BLASTN1824794.gbk
111885041*190784322803Island text2.6432621.677436.1487Neighbours21BLASTN+1885041.gbk
121914000*193472320724Island text1.6575317.374533.0769Neighbours21BLASTN1914000.gbk
132045500*206559920100Island text2.0061317.21734.8115Neighbours21BLASTN2045500.gbk
142200477222506124585Island text1.6053517.029428.3165Neighbours21BLASTN2200477.gbk
152511249253159920351Island text1.6272618.655832.0451Neighbours21BLASTN2511249.gbk
162588954261294423991Island text1.439417.540131.9406Neighbours21BLASTN2588954.gbk
173113253313625323001Island text3.4277517.199731.2036Neighbours21BLASTNIslandViewer 3113253.gbk
183202491322169819208Island text1.6802117.576625.6137Neighbours21BLASTN+3202491.gbk