Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_015637: Vibrio anguillarum 775 chromosome chromosome II, complete sequence

NCBI: NC_015637

Host Lineage: Vibrio anguillarum; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Listonella anguillarum, formerly Vibrio anguillarum is an opportunistic pathogen in economically important marine fish such as eel, flounder and salmon. This disease causes lesions on the skin and around the mouth and gills of the fish often progressing to a systemic infection causing death. If left untreated this disease can cause significant losses in commercial hatcheries.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
132556134777622216Island text1.6450925.913516.9166Neighbours21BLASTN+IslandViewer 325561.gbk
266959369295923367Island text1.5221225.601922.6276Neighbours21BLASTN669593.gbk
3819233*83920119969Island text1.9492724.54514.1588Neighbours21BLASTN+IslandViewer 819233.gbk
489184291186720026Island text1.5086826.535133.0582Neighbours21BLASTN+891842.gbk