Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015636: Methanothermococcus okinawensis IH1 chromosome, complete genome

NCBI: NC_015636

Host Lineage: Methanothermococcus okinawensis; Methanothermococcus; Methanococcaceae; Methanococcales; Euryarchaeota; Archaea

General Information: Country: Japan; Environment: Hydrothermal vent, Deep sea, Fresh water; Isolation: Deep-sea hydrothermal vent chimney; Temp: Thermophile; Temp: 40 - 75C. This is a thermophilic, methane-producing archaeon isolated from a a deep-sea hydrothermal vent chimney at the Iheya Ridge, in the Okinawa Trough, Japan.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
114000*3615522156Island text1.4145616.853126.7999Neighbours21BLASTN+14000.gbk
2419686539123424Island text1.8806414.685728.0058Neighbours21BLASTN41968.gbk
317566020091925260Island text2.0874118.984531.1942Neighbours21BLASTN175660.gbk
4288797*30659917803Island text2.2483616.488329.961Neighbours21BLASTN288797.gbk
531699433952622533Island text2.3289921.683536.4082Neighbours21BLASTN+316994.gbk
6379000*40329324294Island text2.1130818.642236.5866Neighbours21BLASTN+IslandViewer 379000.gbk
7468500*49865030151Island text2.6481519.438834.6008Neighbours21BLASTN468500.gbk
8788532*81412225591Island text3.1854818.130732.9586Neighbours21BLASTN788532.gbk
983222485237420151Island text1.8964217.395728.2495Neighbours21BLASTN832224.gbk
1092781594812920315Island text1.8166617.828925.0807Neighbours21BLASTN927815.gbk
11966000*99326527266Island text1.7411520.963929.193Neighbours21BLASTN966000.gbk
121061736108411822383Island text1.9500115.679729.0108Neighbours21BLASTN1061736.gbk
131123053114623723185Island text1.6567617.649630.1133Neighbours21BLASTN+1123053.gbk
141455700147570220003Island text2.5643517.882633.6984Neighbours21BLASTN1455700.gbk
151477221*150259925379Island text1.8934619.995631.9352Neighbours21BLASTN+1477221.gbk
161603664*162763423971Island text2.6536315.667625.4355Neighbours21BLASTN1603664.gbk
171635400166245827059Island text2.2348116.375932.0806Neighbours21BLASTN+1635400.gbk