Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_015633: Vibrio anguillarum 775 chromosome chromosome I, complete sequence

NCBI: NC_015633

Host Lineage: Vibrio anguillarum; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Listonella anguillarum, formerly Vibrio anguillarum is an opportunistic pathogen in economically important marine fish such as eel, flounder and salmon. This disease causes lesions on the skin and around the mouth and gills of the fish often progressing to a systemic infection causing death. If left untreated this disease can cause significant losses in commercial hatcheries.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
133800035668318684Island text1.6213128.022723.069Neighbours21BLASTN+IslandViewer 338000.gbk
241358744184328257Island text1.559126.741918.632Neighbours21BLASTN+IslandViewer 413587.gbk
346114348763326491Island text3.6068532.654719.438Neighbours21BLASTNIslandViewer 461143.gbk
41702000172537323374Island text1.5196528.568832.5923Neighbours21BLASTN+IslandViewer 1702000.gbk
52327500*235796830469Island text4.0636131.75223.0381Neighbours21BLASTNIslandViewer 2327500.gbk
62565753*261159945847Island text2.5625429.710119.4608Neighbours21BLASTN+IslandViewer 2565753.gbk
72801321282546624146Island text1.3712828.252722.8591Neighbours21BLASTN+IslandViewer 2801321.gbk
82919501294340723907Island text1.5358329.091732.8968Neighbours21BLASTNIslandViewer 2919501.gbk