Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_015602: Lactobacillus kefiranofaciens ZW3 chromosome, complete genome

NCBI: NC_015602

Host Lineage: Lactobacillus kefiranofaciens; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Lactobacillus kefiranofaciens is a species of slime-forming, homofermentative, rod-shaped lactic acid bacteria first isolated from kefir grains, hence its name. Isolated from kefir grain, a traditional dairy product that is known to provide many health benefits to humans collected in Tibet, China.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1117939*15324635308Island text2.049326.704346.5813Neighbours21BLASTN+117939.gbk
21143038116109918062Island text1.4806723.425322.8286Neighbours21BLASTN+1143038.gbk
31339067*136576626700Island text2.4810930.66144.9331Neighbours21BLASTN1339067.gbk
41810500*183260222103Island text2.3699430.768744.0665Neighbours21BLASTN1810500.gbk
51949610197209922490Island text1.4278431.620921.5495Neighbours21BLASTN+IslandViewer 1949610.gbk