Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015601: Erysipelothrix rhusiopathiae str. Fujisawa, complete genome

NCBI: NC_015601

Host Lineage: Erysipelothrix rhusiopathiae; Erysipelothrix; Erysipelotrichaceae; Erysipelotrichales; Firmicutes; Bacteria

General Information: Erysipelothrix rhusiopathiae is a nonsporulating, gram-positive, rod-shaped bacterium which was identified more than 100 years ago as the etiologic agent of swine erysipelas. It has been found to cause infection in many other animals and in humans.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
171471*9458423114Island text3.2011525.126743.5765Neighbours21BLASTN71471.gbk
2436822*46381426993Island text3.3370327.248646.2008Neighbours21BLASTN+436822.gbk
3627217*64930022084Island text1.9469722.052332.9884Neighbours21BLASTN+IslandViewer 627217.gbk
472696274596119000Island text2.9225520.94485.72542Neighbours21BLASTN+IslandViewer 726962.gbk
51107961*115047842518Island text3.7103827.792249.2007Neighbours21BLASTN+1107961.gbk
61229909*125272022812Island text1.403929.322744.4268Neighbours21BLASTN1229909.gbk
71463500148374020241Island text1.9141922.407436.3686Neighbours21BLASTN1463500.gbk