Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015600: Streptococcus pasteurianus ATCC 43144, complete genome

NCBI: NC_015600

Host Lineage: Streptococcus pasteurianus; Streptococcus; Streptococcaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Streptococcus gallolyticus infections in humans are often associated with bacteremia, infective endocarditis and colon cancers. Gram–positive bacteria which are normal inhabitants of the gastrointestinal tract of human and animals, such as cattle, sheep, pigs, horses and dog.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11161640118087019231Island text1.5719921.763531.2401Neighbours21BLASTNIslandViewer 1161640.gbk