Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015594: Sphingobium chlorophenolicum L-1 chromosome chromosome 2, complete

NCBI: NC_015594

Host Lineage: Sphingobium chlorophenolicum; Sphingobium; Sphingomonadaceae; Sphingomonadales; Proteobacteria; Bacteria

General Information: Environment: Soil; Isolation: Sediment, freshwater; Temp: Mesophile; Isolation: freshwater sediment; Country:USA: Minnesota. Sphingobium chlorophenolicum is a gram-negative bacillus isolatedfrom a pentachlorophenol (PCP)-contaminated soil in Minnesota.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
116084817873017883Island text1.5000422.215525.8801Neighbours11BLASTNIslandViewer 160848.gbk
2214500*24065526156Island text3.1302937.824923.1639Neighbours11BLASTN+IslandViewer 214500.gbk
333243235009917668Island text1.5470620.896226.4709Neighbours11BLASTN332432.gbk
441045445109940646Island text1.662925.385925.2954NeighboursBLASTN+IslandViewer 410454.gbk
548936750783318467Island text1.4801522.689720.5323Neighbours11489367.gbk
6579354*60476625413Island text2.2147226.315128.7721Neighbours11BLASTN+579354.gbk
71210736*123455423819Island text2.3287626.90532.0284Neighbours11BLASTN1210736.gbk