Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015589: Desulfotomaculum ruminis DSM 2154 chromosome, complete genome

NCBI: NC_015589

Host Lineage: Desulfotomaculum ruminis; Desulfotomaculum; Peptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Environment: Animal intestinal microflora, Fresh water; Isolation: rumen of hay-fed sheep; Temp: Mesophile; Temp: 37C. Desulfotomaculum ruminis is a spore-forming, sulfate-reducing bacteria.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
17678*2833820661Island text1.6174632.575449.3528Neighbours22BLASTN7678.gbk
2384186782429407Island text1.9640534.485515.4908Neighbours22BLASTN+IslandViewer 38418.gbk
336629639209925804Island text2.8833638.305219.4287Neighbours21BLASTN+IslandViewer 366296.gbk
4626321*64568519365Island text1.6005131.426351.9734Neighbours22BLASTN+626321.gbk
5712626*74082728202Island text1.7339933.577742.8532Neighbours22BLASTN+IslandViewer 712626.gbk
681453084481830289Island text2.509137.066417.9951Neighbours21BLASTN+IslandViewer 814530.gbk
7870804*88987819075Island text1.6291132.122414.9287Neighbours32BLASTN+870804.gbk
81240197127117230976Island text3.4686340.19227.9364Neighbours21BLASTNIslandViewer 1240197.gbk
91439794*146028320490Island text1.5321933.733622.5149Neighbours21BLASTN+IslandViewer 1439794.gbk
101468774149388525112Island text1.912134.322621.4383Neighbours21+1468774.gbk
111523203154220819006Island text1.6557731.277431.636Neighbours22BLASTN+1523203.gbk
121630461*165846428004Island text2.2275536.877716.9524Neighbours22BLASTN+IslandViewer 1630461.gbk
131899329*192221822890Island text2.1314238.038420.0161Neighbours22BLASTN+1899329.gbk
142019370*204178122412Island text2.1582733.816815.6432Neighbours22BLASTN+2019370.gbk
152049328207473025403Island text2.216334.205720.7917Neighbours21BLASTN+IslandViewer 2049328.gbk
162100175*212659826424Island text2.2410536.438222.0981Neighbours22BLASTN2100175.gbk
172209011222895919949Island text1.8563631.970529.4555Neighbours22BLASTN+2209011.gbk
182281054*229997418921Island text1.5387832.940217.9315Neighbours22BLASTN+2281054.gbk
192447132*247022923098Island text1.715333.234844.5532Neighbours22BLASTN+2447132.gbk
202480365*250290422540Island text1.8579237.355422.6276Neighbours22BLASTN+2480365.gbk
212555000*257467119672Island text1.6694832.058632.5253Neighbours22BLASTN2555000.gbk
222846000*287095924960Island text2.216737.951917.5517Neighbours22BLASTN+IslandViewer 2846000.gbk
232878000*290025222253Island text2.0892535.797757.373Neighbours22BLASTN2878000.gbk
242941953*296053218580Island text1.9269231.152719.57Neighbours22BLASTN+2941953.gbk
252999735*302559925865Island text1.932236.081744.9385Neighbours22BLASTN2999735.gbk
263053504307928325780Island text1.8710539.214534.6006Neighbours22BLASTNIslandViewer 3053504.gbk
273085442*310809922658Island text1.8859335.095223.2531Neighbours22BLASTNIslandViewer 3085442.gbk
283241364*327201430651Island text2.0187934.521825.5447Neighbours21BLASTN+IslandViewer 3241364.gbk
293340500*336145820959Island text2.0479834.308931.2053Neighbours22BLASTNIslandViewer 3340500.gbk
303556197357621520019Island text1.679430.474826.6537Neighbours22BLASTNIslandViewer 3556197.gbk
313711821375793046110Island text2.5990237.121625.8338Neighbours21BLASTN+IslandViewer 3711821.gbk
323813415383374520331Island text2.1458133.563425.0713Neighbours21BLASTN+IslandViewer 3813415.gbk
333852217387391321697Island text1.7864831.993826.3321Neighbours22BLASTNIslandViewer 3852217.gbk