Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015588: Isoptericola variabilis 225 chromosome, complete genome

NCBI: NC_015588

Host Lineage: Isoptericola variabilis; Isoptericola; Promicromonosporaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Environment: Host; Isolation: hindgut of Australian termite. This is a cellulolytic and xylanolytic bacterium isolated from the hindgut contents of the Australian termite Mastotermes darwiniensis.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
19569712056724871Island text1.5082213.053314.3014Neighbours11BLASTN+IslandViewer 95697.gbk
247572350009924377Island text1.4544913.649114.5755Neighbours8BLASTN+475723.gbk
3701606*72031718712Island text1.5175116.962525.271Neighbours8BLASTN701606.gbk
4939037*96637727341Island text1.8263314.25113.8069Neighbours11BLASTNIslandViewer 939037.gbk
51213873125011736245Island text2.0476214.989613.7237Neighbours11BLASTN+IslandViewer 1213873.gbk
61463628*149116227535Island text3.6455816.477818.8504Neighbours11BLASTN1463628.gbk
71847500187818330684Island text1.6737515.059114.1148Neighbours11BLASTN+IslandViewer 1847500.gbk
81965787198857522789Island text1.4663912.40885.89597Neighbours8BLASTN1965787.gbk
92037726205909921374Island text1.6027411.015117.5356Neighbours11BLASTN+2037726.gbk
102200517*222724526729Island text1.8376113.41468.97567Neighbours11BLASTN+IslandViewer 2200517.gbk
112281354230471323360Island text1.5745713.970815.5002Neighbours11BLASTN+IslandViewer 2281354.gbk
122468207249482226616Island text1.6870715.374417.855Neighbours11BLASTN+2468207.gbk
132939747*296269722951Island text1.3519811.059111.6092Neighbours11BLASTN2939747.gbk