Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015587: Hydrogenobaculum sp. SHO chromosome, complete genome

NCBI: NC_015587

Host Lineage: Hydrogenobaculum; Hydrogenobaculum; Aquificaceae; Aquificales; Aquificae; Bacteria

General Information: Fresh water. Thermoacidophilic, isolated from a stream adjacent to Obsidian Pool in Yellowstone National Park, USA.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
128997*4924520249Island text1.5518816.758929.4859Neighbours21BLASTN28997.gbk
290539*10951918981Island text1.6038316.211727.9145Neighbours21BLASTN90539.gbk
3114684*15151936836Island text1.6432216.745433.5454Neighbours21BLASTN+114684.gbk
4215433*25810642674Island text1.8662519.203136.0009Neighbours21BLASTN+215433.gbk
5278000*30103523036Island text1.6274916.743730.2899Neighbours21BLASTN+278000.gbk
6558180*57790619727Island text1.6905116.54330.8503Neighbours21BLASTN+558180.gbk
7583530*60741923890Island text1.9142617.090725.018Neighbours21BLASTN+583530.gbk
8765500*79488929390Island text2.5448326.558436.6249Neighbours21BLASTN765500.gbk
9905255*92746322209Island text1.84917.828935.3929Neighbours21BLASTN+905255.gbk
10981808*100567223865Island text1.5739419.185234.806Neighbours21BLASTN981808.gbk
111232642*125792825287Island text2.2759427.1932.8872Neighbours323BLASTN+1232642.gbk
121414304*143487820575Island text1.5540416.275531.4837Neighbours21BLASTN1414304.gbk