Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015580: Novosphingobium sp. PP1Y, complete genome

NCBI: NC_015580

Host Lineage: Novosphingobium; Novosphingobium; Sphingomonadaceae; Sphingomonadales; Proteobacteria; Bacteria

General Information: Novosphingobium sp. PP1Y is a marine bacteria specifically adapted to use fuels as energy source. It is able to grow on a wide range of mono-, poly- and heterocyclic aromatic hydrocarbons. Isolated from a surface seawater sample collected from a closed bay in the harbour of Pozzuoli (Naples, Italy).



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1141379*16878827410Island text3.3822529.637240.3506Neighbours11BLASTN+IslandViewer 141379.gbk
229380333787344071Island text1.6946425.700821.6962Neighbours11BLASTN+IslandViewer 293803.gbk
31302000*132821126212Island text2.4707224.819532.006Neighbours11BLASTN+IslandViewer 1302000.gbk
41328361135233823978Island text1.6690224.890124.6046Neighbours11BLASTN+IslandViewer 1328361.gbk
51584078160892924852Island text1.5647324.737922.9179Neighbours11BLASTN+1584078.gbk
61745918176800522088Island text1.615619.631626.5723Neighbours11BLASTN+IslandViewer 1745918.gbk
72444845247144726603Island text1.5568123.339125.8536Neighbours11BLASTN+IslandViewer 2444845.gbk
83252534327642423891Island text1.3722618.567627.1349Neighbours11BLASTN+3252534.gbk
93411802343087719076Island text1.4879219.005420.6907Neighbours11BLASTN+IslandViewer 3411802.gbk
103779724*380909429371Island text2.6803224.31232.3009Neighbours11BLASTN+3779724.gbk
113834244*385840724164Island text1.635524.971923.3885Neighbours11BLASTN+IslandViewer 3834244.gbk