Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015578: Treponema primitia ZAS-2 chromosome, complete genome

NCBI: NC_015578

Host Lineage: Treponema primitia; Treponema; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: Treponema primitia was one of the first organisms isolated in pure culture from the hindgut of the Pacific dampwood termite Zootermopsis angusticollis. The physiology of this organism has been studied to provide information on its contribution to the growth and survival of termites.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
16182010000438185Island text5.1952843.411618.6108Neighbours21BLASTNIslandViewer 61820.gbk
2247266*28842341158Island text5.1971742.4718.7814Neighbours21BLASTN+IslandViewer 247266.gbk
329898932639727409Island text2.0955336.037634.4333Neighbours22BLASTN+298989.gbk
442300045989336894Island text6.3828343.960817.0582Neighbours21BLASTN+IslandViewer 423000.gbk
546581449800732194Island text3.2065839.037630.2404Neighbours32BLASTN+IslandViewer 465814.gbk
61038588106779529208Island text3.2568939.169727.7311Neighbours22BLASTNIslandViewer 1038588.gbk
71377597139728719691Island text1.5115235.183638.1563Neighbours3691377597.gbk
81430112*145414624035Island text2.149535.105618.9646Neighbours32BLASTN1430112.gbk
91582827*160713224306Island text3.325142.538115.8833Neighbours32BLASTN+IslandViewer 1582827.gbk
101633393*166548932097Island text2.2586238.318818.3188Neighbours32+IslandViewer 1633393.gbk
111807428184533137904Island text3.1129637.507218.0843Neighbours21BLASTN+IslandViewer 1807428.gbk
121940097*198357943483Island text3.7564142.275719.5728Neighbours21BLASTN+IslandViewer 1940097.gbk
132026741*207830751567Island text3.0702439.328319.5649Neighbours32BLASTN+IslandViewer 2026741.gbk
142098163212035422192Island text1.9099336.496238.9032Neighbours369BLASTN2098163.gbk
152191000221359922600Island text2.494435.733829.057Neighbours32BLASTN+IslandViewer 2191000.gbk
162341026238366042635Island text3.3617241.198119.2953Neighbours21BLASTN+IslandViewer 2341026.gbk
172428500*245131322814Island text2.1486135.665427.8336Neighbours32BLASTN2428500.gbk
182727684*275081723134Island text1.9469831.350320.9587Neighbours32BLASTN+IslandViewer 2727684.gbk
193011133303297321841Island text2.4802835.385129.823Neighbours32BLASTNIslandViewer 3011133.gbk
203266855328938922535Island text2.3457835.051412.9553Neighbours32BLASTN3266855.gbk
213309531*333291123381Island text1.8144432.630120.2826Neighbours32BLASTN+3309531.gbk
223371171339554424374Island text2.0343633.362517.3557Neighbours32BLASTN+3371171.gbk
233410367*343483324467Island text2.5844637.313424.5203Neighbours21BLASTN+IslandViewer 3410367.gbk
243442866346522822363Island text1.9277935.517430.6Neighbours369BLASTN+IslandViewer 3442866.gbk
253495034351728422251Island text1.8821133.722827.1278Neighbours32BLASTN+IslandViewer 3495034.gbk
263561838*358469322856Island text1.8613831.702929.1997Neighbours32BLASTN+3561838.gbk
273694813*372039825586Island text2.9570339.603621.3937Neighbours22BLASTN+IslandViewer 3694813.gbk
283914189393836324175Island text2.7538537.76715.8867Neighbours22BLASTNIslandViewer 3914189.gbk
293980496402949649001Island text5.2853343.222818.5986Neighbours21BLASTN+IslandViewer 3980496.gbk