Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015577: Treponema azotonutricium ZAS-9 chromosome, complete genome

NCBI: NC_015577

Host Lineage: Treponema azotonutricium; Treponema; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: Treponema azotonutricium was one of the first organisms isolated in pure culture from the hindgut of the Pacific dampwood termite Zootermopsis angusticollis. The physiology of this organism has been studied to provide information on its contribution to the growth and survival of termites.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1383071*40122118151Island text1.9235129.447318.4797Neighbours32BLASTNIslandViewer 383071.gbk
242775245329625545Island text2.5345135.814119.6412Neighbours32BLASTN+IslandViewer 427752.gbk
3676453*69823821786Island text1.7337330.48626.2882Neighbours32BLASTN676453.gbk
478615581300926855Island text2.9874237.493628.2289Neighbours22BLASTN+IslandViewer 786155.gbk
5862659*88387621218Island text1.6337431.444621.6906Neighbours32BLASTN+862659.gbk
61170186118955919374Island text1.8445129.988418.1752Neighbours21BLASTN+IslandViewer 1170186.gbk
71289975132020230228Island text1.9599334.023828.2431Neighbours32BLASTN1289975.gbk
81392390142051328124Island text3.3232138.205921.1671Neighbours32BLASTN+IslandViewer 1392390.gbk
91462874149362030747Island text3.3796737.2919.9896Neighbours21BLASTN+IslandViewer 1462874.gbk
101682970170661223643Island text2.0997832.320819.5665Neighbours32BLASTN+1682970.gbk
111794560183220337644Island text3.5723639.288214.6992Neighbours21BLASTN+IslandViewer 1794560.gbk
121974821*199673021910Island text2.1281332.084715.5713Neighbours32BLASTN+1974821.gbk
132081196*213114449949Island text2.972239.071621.2246Neighbours22BLASTN+IslandViewer 2081196.gbk
142143477*216481221336Island text1.8886132.679824.1406Neighbours32BLASTN+2143477.gbk
152203835*222728123447Island text2.5365834.122518.3919Neighbours32BLASTN+IslandViewer 2203835.gbk
162508027253268624660Island text2.0959635.084732.476Neighbours22BLASTN+IslandViewer 2508027.gbk
172866601291089444294Island text1.653236.976140.2519Neighbours369BLASTN+2866601.gbk
183113907315394840042Island text4.7863540.071524.7007Neighbours21BLASTN+IslandViewer 3113907.gbk
193244857*326959924743Island text2.3005935.524119.1924Neighbours32BLASTN+IslandViewer 3244857.gbk
203364985338751422530Island text1.7692628.760516.7237Neighbours32BLASTN+IslandViewer 3364985.gbk
213589884*362159931716Island text2.8042437.631119.5124Neighbours32BLASTN+IslandViewer 3589884.gbk
223621777*364653624760Island text1.6344828.544523.5656Neighbours32BLASTN+3621777.gbk
233688071370823020160Island text1.7707230.505232.5192Neighbours32BLASTN+3688071.gbk
243735558375570920152Island text1.5489629.681428.487Neighbours32BLASTN+IslandViewer 3735558.gbk
253776295379745421160Island text1.9109432.195819.0949Neighbours32BLASTN+IslandViewer 3776295.gbk