Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015576: Mycobacterium sp. JDM601 chromosome, complete genome

NCBI: NC_015576

Host Lineage: Mycobacterium; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Isolated from a patient with tuberculosis-like disease and with various antibiotic resistances. Human pathogen.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
161216467488062717Island text1.6371716.504720.8304Neighbours11BLASTN+612164.gbk
2808926*83565426729Island text1.8854715.785323.7841Neighbours11BLASTN+IslandViewer 808926.gbk
31442713147609933387Island text1.7640717.4927.1921Neighbours11BLASTN+IslandViewer 1442713.gbk
43009335303099321659Island text1.7864215.334416.9494Neighbours11BLASTN+3009335.gbk
53976679403475658078Island text1.6214515.002815.9407Neighbours11BLASTN+3976679.gbk
64070195409284122647Island text1.5328714.871118.9609Neighbours11BLASTN4070195.gbk