Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015574: Methanobacterium sp. SWAN-1 chromosome, complete genome

NCBI: NC_015574

Host Lineage: Methanobacterium paludis; Methanobacterium; Methanobacteriaceae; Methanobacteriales; Euryarchaeota; Archaea

General Information: Temp: Mesophile. Autotrophic methanogen, Nitrogen fixation.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1114426*13463720212Island text1.7422324.975738.3457Neighbours21BLASTN114426.gbk
214300016173618737Island text1.571220.12433.1709Neighbours21BLASTN+143000.gbk
3228948*24837019423Island text2.3398122.131939.3491Neighbours21BLASTN+228948.gbk
4254731*28709932369Island text2.2868425.089441.1932Neighbours21BLASTN+254731.gbk
5391869*41243720569Island text1.8487520.780635.5768Neighbours21391869.gbk
6806762*83116424403Island text1.8232329.066540.2272Neighbours21BLASTN806762.gbk
7868000*89009922100Island text1.7474929.740443.3695Neighbours21BLASTN+868000.gbk
81046500*106609919600Island text1.6097127.385741.2742Neighbours21BLASTN1046500.gbk
91474967149660321637Island text1.6250321.445832.708Neighbours21BLASTN+1474967.gbk
101541613*157767936067Island text2.297322.570640.7504Neighbours21BLASTN1541613.gbk
111676798169711020313Island text2.121823.058539.6479Neighbours21BLASTN1676798.gbk
121743999176167317675Island text1.6763321.209331.4411Neighbours21+1743999.gbk
131845000*186358018581Island text2.7269320.792838.7623Neighbours21BLASTN+1845000.gbk
141970967*199397123005Island text1.857729.874141.826Neighbours21BLASTN+1970967.gbk
152021300*203951718218Island text1.6505919.497835.589Neighbours21BLASTN2021300.gbk
162057602*208210924508Island text1.9879824.415538.8275Neighbours21BLASTN+2057602.gbk
172145000216983724838Island text1.834929.802137.2635Neighbours21BLASTN2145000.gbk
182221220224016418945Island text1.7426820.985333.4724Neighbours21BLASTN+2221220.gbk
192262742228360320862Island text1.6156522.709425.9578Neighbours21BLASTN2262742.gbk
202322811234307020260Island text1.675820.646927.9449Neighbours21BLASTN+2322811.gbk
212355500*237370118202Island text1.8856319.990329.4677Neighbours212355500.gbk
222413893*243159917707Island text1.658420.81132.6654Neighbours21BLASTN+2413893.gbk
232501869*252457722709Island text1.5020921.789921.5008Neighbours21BLASTN2501869.gbk