Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015573: Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genome

NCBI: NC_015573

Host Lineage: Desulfotomaculum kuznetsovii; Desulfotomaculum; Peptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Country: Georgia; Environment: Animal intestinal microflora, Fresh water; Isolation: underground thermal mineral water; Temp: Mesophile; Temp: 60C. Desulfotomaculum kuznetsovii is a thermophilic spore-forming bacterium which can grow using sulfate as an electron acceptor. This organism is isolate from hot springs and oil field samples.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111010813919629089Island text2.342637.166432.4752Neighbours22BLASTN+IslandViewer 110108.gbk
2162000*18459922600Island text1.7434732.119435.6062Neighbours316BLASTN+IslandViewer 162000.gbk
333096635486323898Island text1.6055728.94636.8586Neighbours22BLASTN+330966.gbk
4569625*60324033616Island text2.0701538.66235.002Neighbours22BLASTNIslandViewer 569625.gbk
564980067054820749Island text1.67828.643547.9555Neighbours22BLASTNIslandViewer 649800.gbk
677620980469328485Island text1.5161231.672546.1201Neighbours316BLASTN+IslandViewer 776209.gbk
781300086248249483Island text2.0945732.87144.1425Neighbours22BLASTN+IslandViewer 813000.gbk
889386293215738296Island text1.5300828.391136.4405Neighbours316BLASTN+IslandViewer 893862.gbk
9997629101559917971Island text1.5284127.586936.0884Neighbours316BLASTN997629.gbk
101045877106722321347Island text1.5467427.930830.7239Neighbours316BLASTN+IslandViewer 1045877.gbk
111573621159318319563Island text1.4902829.64831.0954Neighbours316BLASTN+1573621.gbk
121671000*169381422815Island text1.7271832.94228.8013Neighbours316BLASTNIslandViewer 1671000.gbk
131729057175782628770Island text1.804330.092746.3878Neighbours22BLASTN+IslandViewer 1729057.gbk
141979202*200244723246Island text1.5083427.735930.9721Neighbours316BLASTN+1979202.gbk
152040500206151621017Island text1.8741735.754235.8613Neighbours316BLASTN+IslandViewer 2040500.gbk
162063925209104527121Island text1.9346936.070141.8192Neighbours316BLASTN+IslandViewer 2063925.gbk
172187688221260224915Island text1.8174532.835540.1802Neighbours22BLASTN+IslandViewer 2187688.gbk
182323268234717123904Island text1.5007433.554234.1333Neighbours316BLASTN2323268.gbk
192463123251425551133Island text1.9548836.008131.8844Neighbours22BLASTN+IslandViewer 2463123.gbk
202900906293080529900Island text1.7495434.202236.1831Neighbours22BLASTN+IslandViewer 2900906.gbk
212975000299859923600Island text1.7843433.590236.1568Neighbours316BLASTNIslandViewer 2975000.gbk
223070582*309409923518Island text1.5291830.064441.0951Neighbours316BLASTN3070582.gbk
233167207318697119765Island text1.5413829.447330.9477Neighbours316BLASTN+3167207.gbk
243243613326671523103Island text1.5371830.538726.879Neighbours22BLASTN+IslandViewer 3243613.gbk