Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015572: Methylomonas methanica MC09 chromosome, complete genome

NCBI: NC_015572

Host Lineage: Methylomonas methanica; Methylomonas; Methylococcaceae; Methylococcales; Proteobacteria; Bacteria

General Information: Environment: Soil; Isolation: soil; Temp: Mesophile. This organism is methanotrophic able to grow using methane or methanol as a sole source of carbon and energy.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
115300753007Island text1.61234.000926.2817Neighbours42BLASTN+IslandViewer 1.gbk
2655979305227456Island text2.1721836.926220.1856Neighbours35BLASTN+65597.gbk
3293665*31730223638Island text1.5181929.57252.1501Neighbours35BLASTN+293665.gbk
431972534129121567Island text1.6127434.854538.8727Neighbours41BLASTN319725.gbk
5427732*45612728396Island text2.6209539.124126.7943Neighbours35BLASTN427732.gbk
61252000132032868329Island text2.3193538.754139.535Neighbours21BLASTN+IslandViewer 1252000.gbk
71421782146529043509Island text1.8658534.050234.3793Neighbours320BLASTN+1421782.gbk
81974000*199616522166Island text1.4669231.237824.8873Neighbours35BLASTN1974000.gbk
92186394223161345220Island text1.9005433.133125.426Neighbours46BLASTN+IslandViewer 2186394.gbk
102262374228718524812Island text1.564428.292227.6282Neighbours35BLASTN+2262374.gbk
112541968256409922132Island text1.4748930.526535.3636Neighbours35BLASTN+2541968.gbk
122713599273630422706Island text1.4718529.304519.4421Neighbours41BLASTN+IslandViewer 2713599.gbk
133091707*313267640970Island text1.4867232.426623.0736Neighbours35BLASTN+IslandViewer 3091707.gbk
143723498374383520338Island text1.6142429.590220.5049Neighbours41BLASTN3723498.gbk
154063150409756834419Island text1.8020334.227236.7011Neighbours11+IslandViewer 4063150.gbk
164209000*424633837339Island text2.0052940.021843.3665Neighbours320BLASTN+IslandViewer 4209000.gbk
174576778460783531058Island text1.9299536.417832.0757Neighbours35BLASTN+4576778.gbk
184618467*464627927813Island text2.3665437.668348.0336Neighbours35BLASTN+IslandViewer 4618467.gbk
194916430495009933670Island text2.1744137.636228.625Neighbours42BLASTN+IslandViewer 4916430.gbk