Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015567: Serratia sp. AS9 chromosome, complete genome

NCBI: NC_015567

Host Lineage: Serratia plymuthica; Serratia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Environment: Host; Isolation: Rapeseed plant; Temp: Mesophile. promotes plant growth and inhibits plant pathogens.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
169190*9503025841Island text3.6019243.808427.4345Neighbours41BLASTN+IslandViewer 69190.gbk
231303533628323249Island text1.530632.028242.2037Neighbours51BLASTN313035.gbk
334650038359937100Island text2.9086842.299536.6405Neighbours41BLASTN+IslandViewer 346500.gbk
4547500*57779630297Island text3.6386646.16335.6623Neighbours41BLASTNIslandViewer 547500.gbk
51127780*116575637977Island text4.4177546.216424.9305Neighbours41BLASTN+IslandViewer 1127780.gbk
61206727*124209935373Island text2.6594142.872826.3258Neighbours41BLASTN+IslandViewer 1206727.gbk
71660462170120640745Island text3.8559642.615829.0995Neighbours41BLASTNIslandViewer 1660462.gbk
82039443*205864519203Island text1.5006429.821333.0917Neighbours41BLASTN+IslandViewer 2039443.gbk
92125415*214809922685Island text1.9155332.258624.305Neighbours41BLASTNIslandViewer 2125415.gbk
102328782235384725066Island text1.9152434.463723.2874Neighbours41BLASTN+IslandViewer 2328782.gbk
112420169243905918891Island text1.5122932.84920.3131Neighbours41BLASTN2420169.gbk