Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015566: Serratia sp. AS12 chromosome, complete genome

NCBI: NC_015566

Host Lineage: Serratia; Serratia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Environment: Host; Isolation: Rapeseed plant; Temp: Mesophile. Promotes plant growth and inhibits plant pathogens.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
169190*9503025841Island text3.5210644.688626.8136Neighbours41BLASTN+IslandViewer 69190.gbk
231634033998123642Island text1.6232734.969941.8565Neighbours51BLASTNIslandViewer 316340.gbk
334508438359938516Island text2.9989843.935436.4878Neighbours41BLASTN+IslandViewer 345084.gbk
4547387*57761030224Island text3.7939147.070534.9148Neighbours41BLASTNIslandViewer 547387.gbk
51127595*116557137977Island text4.4205146.742424.5299Neighbours41BLASTN+IslandViewer 1127595.gbk
61206500*124185935360Island text2.7098944.174425.9747Neighbours41BLASTN+IslandViewer 1206500.gbk
71659288170119441907Island text3.8994544.700529.0352Neighbours41BLASTNIslandViewer 1659288.gbk
81941407*196269221286Island text1.5793730.696724.9665Neighbours41BLASTN+1941407.gbk
92039431*206952030090Island text2.6403340.277925.9305Neighbours41BLASTN+IslandViewer 2039431.gbk
102125403*214809922697Island text1.960434.00624.7314Neighbours41BLASTNIslandViewer 2125403.gbk
112328771235231223542Island text1.9764235.379223.9382Neighbours41BLASTN+IslandViewer 2328771.gbk
122420287243917718891Island text1.5080234.995119.4482Neighbours41BLASTN2420287.gbk
132957956297755619601Island text1.604530.279331.9345Neighbours41BLASTN+2957956.gbk
143269469329221522747Island text1.4333434.995130.8868Neighbours41BLASTN3269469.gbk
153417951*345859940649Island text1.5226532.672324.4912Neighbours41BLASTN+IslandViewer 3417951.gbk
163622385*364177919395Island text1.5137935.332624.7015Neighbours41BLASTN+3622385.gbk
173659318*367796918652Island text1.5016431.450637.2944Neighbours41BLASTN+3659318.gbk
184049000406909920100Island text1.7392235.29124.9706Neighbours41BLASTN4049000.gbk
194205854*422474018887Island text1.7094530.845743.4949Neighbours51BLASTN+4205854.gbk
204350080437739527316Island text2.7719640.791226.8154Neighbours41BLASTN+IslandViewer 4350080.gbk
214547702*457209124390Island text1.8389538.478822.4632Neighbours41BLASTN+IslandViewer 4547702.gbk
224662171468741325243Island text1.8529141.885541.7543Neighbours51BLASTN4662171.gbk
235197624521937421751Island text1.8465733.319829.2012Neighbours41BLASTN+5197624.gbk