Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015565: Desulfotomaculum carboxydivorans CO-1-SRB chromosome, complete

NCBI: NC_015565

Host Lineage: Desulfotomaculum carboxydivorans; Desulfotomaculum; Peptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Country: Netherlands; Environment: Animal intestinal microflora, Fresh water; Isolation: Sludge from an anaerobic bioreactor treating; Temp: Mesophile; Temp: 37C. Desulfotomaculum carboxydivorans is a sulfate-reducing bacterium which is able to grow in an atmosphere of pure carbon monoxide.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112835015511926770Island text1.5589837.513950.2358BLASTN+128350.gbk
2173774*19221918446Island text1.678529.003554.5347Neighbours22BLASTN+173774.gbk
328790033409146192Island text3.1272735.321831.7125Neighbours21BLASTN+IslandViewer 287900.gbk
434894137442425484Island text1.8084130.84543.6552Neighbours21BLASTN348941.gbk
5431273*45191820646Island text1.7438331.71148.1504BLASTN+431273.gbk
6530000*55297022971Island text2.0989533.709356.5111Neighbours22BLASTN+530000.gbk
762429864929124994Island text1.6316128.255727.6465Neighbours316BLASTN624298.gbk
8824448*84309918652Island text1.7829428.790717.4199Neighbours21BLASTN+824448.gbk
91075693*109865622964Island text1.7596431.716647.4662Neighbours22BLASTN+1075693.gbk
101163148*118631723170Island text1.6318428.435148.5565Neighbours22BLASTN+IslandViewer 1163148.gbk
111281397*130083519439Island text1.7139128.3519.5152Neighbours21BLASTN+1281397.gbk
121511426152959918174Island text1.5713528.906229.6382Neighbours22BLASTN+1511426.gbk
131647554*166559918046Island text1.8929428.830332.708Neighbours21BLASTN1647554.gbk
141920329193959919271Island text2.0948829.160617.3646Neighbours21BLASTN+IslandViewer 1920329.gbk
152027279*208065353375Island text1.721531.567644.5862Neighbours22BLASTN+IslandViewer 2027279.gbk
162408669243350624838Island text1.9387333.778726.7755Neighbours21BLASTN+IslandViewer 2408669.gbk
172508345*253809929755Island text2.8989134.381831.9905Neighbours21BLASTN2508345.gbk
182736500277293936440Island text1.7086531.450925.3295Neighbours22BLASTN+IslandViewer 2736500.gbk
192827444*284900721564Island text2.0677931.081124.3148Neighbours21BLASTN+2827444.gbk
202879603*290599926397Island text1.9823926.209922.3962Neighbours22BLASTN+2879603.gbk