Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015563: Delftia sp. Cs1-4 chromosome, complete genome

NCBI: NC_015563

Host Lineage: Delftia; Delftia; Comamonadaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Country: USA; Environment: Fresh water, Oil fields, Sludge, Soil; Isolation: PAH contaminated soils in Wisconsin; Temp: Mesophile; Temp: 30C.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
131328333492521643Island text2.6993626.994834.2048Neighbours11BLASTN313283.gbk
233494235315818217Island text1.5271720.233533.4815Neighbours11BLASTN+334942.gbk
360678362671319931Island text1.5343420.415924.3696Neighbours11BLASTNIslandViewer 606783.gbk
473370475607422371Island text1.5182521.037232.9919Neighbours11BLASTNIslandViewer 733704.gbk
51129469116017830710Island text4.4190440.779829.3804Neighbours11BLASTN+IslandViewer 1129469.gbk
61172745119510222358Island text1.9087222.563719.8715Neighbours11BLASTN1172745.gbk
71240978126477223795Island text2.0626528.664230.8278Neighbours11BLASTN+1240978.gbk
81595500*161973624237Island text3.3162931.965244.8362Neighbours11BLASTNIslandViewer 1595500.gbk
91951368199617644809Island text3.1900430.894629.7202Neighbours11BLASTN+IslandViewer 1951368.gbk
102018038203772119684Island text1.61620.324714.5328Neighbours11BLASTN+IslandViewer 2018038.gbk
112656628268487728250Island text2.0048425.089837.4193Neighbours11BLASTN+2656628.gbk
122702787272250819722Island text2.1464620.92228.4139Neighbours11BLASTN+IslandViewer 2702787.gbk
133049331307118921859Island text1.9455421.64422.9585Neighbours11BLASTN+IslandViewer 3049331.gbk
143074691309482320133Island text1.819923.309820.1608Neighbours11BLASTN+IslandViewer 3074691.gbk
153203012325659153580Island text3.2759941.862630.2578Neighbours11BLASTN+IslandViewer 3203012.gbk
163266004329641130408Island text3.5190434.939920.5138Neighbours11BLASTN+IslandViewer 3266004.gbk
173309097334276333667Island text2.5569428.930944.5616Neighbours11BLASTN+IslandViewer 3309097.gbk
183401867*342947527609Island text2.6530627.272122.9973Neighbours11BLASTN+IslandViewer 3401867.gbk
193511951354146929519Island text4.712340.842723.8897Neighbours11BLASTN+IslandViewer 3511951.gbk
203571682359959927918Island text3.6390930.796439.1807Neighbours11BLASTN+IslandViewer 3571682.gbk
213786192*382040734216Island text2.9529.861534.8327Neighbours11BLASTN+IslandViewer 3786192.gbk
223979500*400273623237Island text2.8845428.452425.4736Neighbours11BLASTN+IslandViewer 3979500.gbk
234024450405303928590Island text3.0964931.843732.4124Neighbours11BLASTN+IslandViewer 4024450.gbk
244093650*411960125952Island text2.9327227.169917.9717Neighbours11BLASTN+IslandViewer 4093650.gbk
254206112422876622655Island text1.7881121.524819.8048Neighbours11BLASTN4206112.gbk
264383000440526222263Island text2.302422.832332.334Neighbours11BLASTN+4383000.gbk
274414854443826923416Island text2.0149920.508821.516Neighbours11BLASTN+4414854.gbk
284583906*460773623831Island text1.5912319.555626.3004Neighbours11BLASTN+IslandViewer 4583906.gbk
294629436465219622761Island text2.21421.118123.0844Neighbours11BLASTNIslandViewer 4629436.gbk
304773415479788824474Island text1.4027620.780629.4859Neighbours11BLASTN+4773415.gbk
314911188*493357422387Island text1.831322.267536.6145Neighbours11BLASTN4911188.gbk
324959843498466724825Island text2.109126.110340.9705Neighbours11BLASTN+IslandViewer 4959843.gbk
335162177*518611723941Island text2.0222322.50423.4535Neighbours11BLASTN+5162177.gbk
345289875531094221068Island text1.8204821.95531.932Neighbours11BLASTN+IslandViewer 5289875.gbk
355843703587042126719Island text2.1707423.292341.9828Neighbours11BLASTN+IslandViewer 5843703.gbk
366167512*618907121560Island text1.5718822.692731.0102Neighbours11BLASTN+6167512.gbk
376357653638561927967Island text3.0874633.294232.636Neighbours11BLASTNIslandViewer 6357653.gbk